Difference between revisions of "XENLA Genome"
From Marcotte Lab
(→Genome version) |
(→Genome version) |
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|JGIv6 | |JGIv6 | ||
|2012 Jul. | |2012 Jul. | ||
− | | | + | |2.75 Gbp |
− | | | + | |0.70 Mbp |
− | | | + | |8,426 |
|Officially released in XenBase. | |Officially released in XenBase. | ||
|- | |- | ||
|JGIv6a | |JGIv6a | ||
|2012 Jul. | |2012 Jul. | ||
− | | | + | |2.75 Gbp |
− | | | + | |0.70 Mbp |
− | | | + | |8,426 |
− | |Officially released in XenBase. | + | |Officially released in XenBase;<br/> Minor update of JGIv6. |
|- | |- | ||
|NIGv1 | |NIGv1 |
Revision as of 14:15, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp | Remarks |
---|---|---|---|---|---|
JGIv1 | 2010 Dec. | 2.30 Gbp | 8 kbp | 385,933 | Internal Use Only. |
JGIv5 | 2011 Oct. | 2.84 Gbp | 0.28 Mbp | 16,625 | Released in Xenopus PI Meeting. |
JGIv6 | 2012 Jul. | 2.75 Gbp | 0.70 Mbp | 8,426 | Officially released in XenBase. |
JGIv6a | 2012 Jul. | 2.75 Gbp | 0.70 Mbp | 8,426 | Officially released in XenBase; Minor update of JGIv6. |
NIGv1 | 2012 Nov. | 2.88 Gbp | 0.34 Mbp | 14,260 | Original name is 'xl.v1soap'; Internal Use Only. |
NIGv1ap | 2012 Nov. | 3.27 Gbp | 0.17 Mbp | 39,283 | Original name is 'xl.v3ap'(AllPath?); Internal Use Only. |
NIGv1m | 2012 Nov. | 2.84 Gbp | 0.28 Mbp | 82,132 | Original name is 'xl.v5m'; Internal Use Only. |
NIGv2 | 2013 Feb. | ||||
NIGv2c | 2013 Feb. | ||||
JGIv7a | 2013 Mar. | 2.72 Gbp | 1.15 Mbp | 5,714 | JGI7;Internal Use Only. |
JGIv7b | 2013 May | 2.78 Gbp | 3.49 Mbp | 2,598 | JGI7.2;Internal Use Only. |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair